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List of Grad Schools - Bioinformatics
Arizona State
University Tempe, Arizona
•MS in
Computational Biosciences
Boston University Boston,
Massachusetts
•Bioinformatics
Graduate Program; MS, PhD
Brandeis University's Rabb
School of Summer and Continuing Studies Waltham, Massachusetts
•MS
in Bioinformatics
•Graduate
Certificate in Bioinformatics
Carnegie Mellon University
Pittsburgh, Pennsylvania
•Merck
Computational Biology and Chemistry Program; BS, MS, PhD tracks
Columbia University New York,
New York
•Medical
Informatics; MS, PhD
Duke University Durham, North
Carolina
•Center for
Bioinformatics and Computational Biology; Postdoctoral, Certificate, PhD
Florida State University
Tallahassee, FL
•Biomedical
Mathematics; MS, PhD
George Mason University Fairfax,
Virginia
•PhD
in Computational Sciences and Informatics
•PhD
in Bioinformatics
•MS
in Bioinformatics
•MNPS
in Bioinformatics, Biotechnology, and Forensic Biosciences
Georgetown University
Washington, D.C.
•Biotechnology
and Bioinformatics; MS track
Georgia Institute of Technology
Atlanta, Georgia
•Bioinformatics;
BS, MS, PhD tracks
•MS
in Bioinformatics
•PhD
in Bioinformatics
Harvard-MIT Division of Health
Sciences and Technology Cambridge, Massachusetts
•Bioinformatics and
Integrative Genomics; PhD track
Indiana
University School of Informatics Bloomington, Indiana
•BS
in Informatics
•MS
in Bioinformatics
•MS
in Chemical Informatics
International Bioinformatics and
Computational Biology Programs From the Web site of the
International Society for Computational Biology, a listing of universities
worldwide that offer degrees in bioinformatics and computational biology.
Iowa State University Ames,
Iowa
•Interdisciplinary
PhD Program in Bioinformatics and Computational Biology; MS, PhD
Johns Hopkins University Baltimore,
Maryland
•Program in
Computational Biology; PhD track
Keck Graduate School Claremont,
Southern California
•MS in Bioscience
Marquette University Milwaukee,
Wisconsin
•Special
Interdisciplinary Major/Minor (Dept. of Mathematics, Statistics, and
Computer Science); BS
•Bioinformatics
Graduate Program (with the Medical College of Wisconsin and UW Parkside);
MS
McGill University Montreal,
Canada
•Centre
for Bioinformatics; BS minor; proposed MS and PhD
Medical College of Wisconsin
Milwaukee, Wisconsin
•Bioinformatics
Graduate Program; MS
Montana State University
Bozeman, Montana
•Center for
Computational Biology; MS, PhD track
New Jersey Institute of Technology
Newark, New Jersey
•MS
in Computational Biology
•PhD
in Computational Biology
North Carolina State University
Raleigh, North Carolina
•Statistical
Genetics and Bioinformatics
•PhD
in Bioinformatics
•Master
of Bioinformatics
•Program
in Statistical Genetics
Northeastern University
Boston, Massachusetts
•Bioinformatics
Essentials Graduate Certificate
•Graduate
Certificate in Pharmacogenetics
Northern Illinois University DeKalb,
Illinois
•Bioinformatics
Specialization and Certificate; MS, Certificate
Oregon Health & Science University
Portland, Oregon
•Medical
Informatics; MS
Rensselaer Polytechnic Institute
Troy, New York
•Interdisciplinary
Program in Bioinformatics and Molecular Biology; BS, MS, PhD
Rice Universityfs Keck Center for
Computational Biology Houston, Texas
•An
Integrated Training Program: Bioinformatics and Computational Biology
Training Program, and Computational Biology Research Training Program; PhD
track
Rochester Institute of
Technology Rochester, New York
•Bioinformatics
and Biotechnology Programs; BS, MS
Rutgers University Camden, New
Jersey
•Graduate Studies in
Computational Molecular Biology; PhD
Stanford University Stanford,
California
•Biomedical
Informatics; MS, PhD
•Bioinformatics
Certificate
University of California, Davis
Davis, California
•Graduate
Program in Medical Informatics; MS
•Designated
Emphasis in Biotechnology; PhD
•Summer
Short Courses in Bioinformatics and Proteomics
University of California, Irvine
Irvine, California
•Informatics
in Biology and Medicine; MS and PhD track
University of California, San Diego
San Diego, California
•Interdisciplinary
Bioinformatics Program; PhD
•Certificate
in Bioinformatics
University of California, San Francisco
San Franciso, California
•Graduate Program in
Biological and Medical Informatics; MS, PhD
University of
California, Santa Cruz Santa Cruz, California
•Program
in Bioinformatics; BS; Proposed MS and PhD
University of Colorado at
Denver Denver, Colorado
•Center
for Computational Biology; Certificate, MS, PhD
University of Illinois, Chicago
Chicago, Illinois
•Bioinformatics;
BS, MS, PhD
University of Massachusetts, Lowell
Lowell, Massachusetts
•Bioinformatics;
BS, MS, PhD
University of Medicine and Dentistry of
New Jersey Newark, New Jersey
•
Graduate Programs in Biomedical Informatics; PhD, MS, MSN, certificate
University of Memphis Memphis,
Tennessee
•Masters
Degree Concentration in Bioinformatics
University of Michigan Ann Arbor,
Michigan
•Bioinformatics;
MS, PhD
University of
Minnesota Twin Cities, Minnesota
•Graduate Program in
Bioinformatics; MS and PhD minor
University of Nebraska, Omaha
Omaha, Nebraska
•Bioinformatics;
MS and PhD track
University of New South Wales
Sydney, Australia
•BS
in Engineering (Bioinformatics)
University of Pennsylvania
Philadelphia, Pennsylvania
•Computational
Biology; BS, MS, PhD track
University of Southern California
Los Angeles, California
•MS
in Computational Molecular Biology
•Computational
Biology and Bioinformatics; PhD track
University of Texas, Austin
Austin, Texas
•Graduate
Program in Cell & Molecular Biology, with specialized track in
Bioinformatics; PhD track
University of Texas, El Paso El
Paso, Texas
•Bioinformatics;
MS
University of the Sciences in Philadelphia
Philadelphia, Pennsylvania
•Bioinformatics;
BS, MS
University of Washington
Seattle, Washington
•Biomedical
and Health Informatics; MS; PhD and certificates proposed
•Computational
Molecular Biology; PhD track
University of Waterloo
Ontario, Canada
•Bioinformatics;
BS, MS, PhD
University of Wisconsin Madison,
Wisconsin
•Biostatistics
and Medical Informatics; MS, PhD
•Graduate
Certificate/Capstone Certificate in Bioinformatics; Certificate programs
for graduate and post-doctoral students
Vanderbilt University
Nashville, Tennessee
•Graduate
Program in Biomedical Informatics; MS, PhD
Virginia Polytechnic Institute and State
University Blacksburg, Virginia
•Graduate
Options in Bioinformatics; MS and PhD track
Washington University in Saint Louis
Saint Louis, Missouri
•Computational
Biology; PhD
Sunday, March 12, 2006
Some important links to quench your thirst for knowledge in bioinformatics
Biological Databases
- Bibliographic:
- SeqAnalRef , sequence analysis bibliography, Expasy.
- BIOBOB , Biocomputing biliography.
- The BioCatalog
- Yellow BAGI
- Archives for Biological Software and Databases Around the World .
- MolBiology Software , List of software for molecular biology.
- ACNUC .
- SRSWWW ( Oslo , EBI )
- NIH GenoBase .
- SWISS-PROT .
- OWL .
- PIR .
- SCOP .
- PDB (RCSB) .
- Tree classification of PDB (by Alexandrov and Fischer using SARF2 ).
- CATH Protein Structure Classification
- SCOP Structural Classification of Proteins.
- PDB chain clustering produced by Fischer et al.
- LiMB (gopher).
- BioDatabases List .
Online Visualization Tools
Online Programes
- Pratt - pattern discovery online
- Expression Profiler - online tool for expression profile clustering and sequence pattern discovery
- Database searches , EBI ( Fasta , Blitz ,...).
- Database searches at DISC (Japan) -- includes Fasta, BLAST, MPsrch and SRS Fasta
- Biologist's Control Panel (Baylor college of medicine).
- BCM Search Launcher searches, alignments.
- SAM , Sequence alignment and modeling system (using HMMs).
- Match sequence against PROSITE .
- AMAS Analysis of multiple alignments (Geoff Barton).
- MSA, Clustal W multiple sequence alignment.
- PredictProtein , Heidelberg.
- PSA , Protein Sequence Analysis: fits a structure model to your sequence.
- Sequence analysis tools , PDB, including multiple sequence alignment .
- MEME , motif discovery tool.
- Block Maker , at Fred Hutchinson Cancer Research Center.
- Bioinformation Search Center
- Longer list
Tools
- J-Express , a tool for analysing microarray gene expression data
- Clustal W , multiple sequence alignment
- Phylip , phylogenetic analysis.
- Pratt , pattern discovery.
- GCG , Wisconsin Sequence Analysis Package Program Manual.
- PROPHET , UNIX based software package for data analysis.
- RasMol , free program which displays molecular structures.
- MolScript , program for creating molecular graphics in the form of PostScript plot files.
- PairWise and SearchWise , Ewan Birney's excellent tools for sequence alignment and search.
- MEME , Multiple EM for Motif Elicitation
Bioinformatics Sites
- EMBnet node in Oslo .
- RNA World
- EBI , the EMBL Outstation Hinxton.
- EMBL , Heidelberg.
- EMBnet , the European network for molecular biology.
- BIOSCI , Bionet electronic newsgroups.
- CBS , Center for Biological Sequence Analysis, Technical University of Denmark.
- Expasy , Geneve.
- BIBISERV , Bielefeld University Bioinforrmatics Server.
- Nee-How , The Bioresource Finder
- BSM , Biomolecular Structure and Modelling at UCL.
- Human Genome Project Information
- Sanger centre , Hinxton, England.
- SEQNET , Daresbury, England.
- The Johns Hopkins University BioInformatics Web Server.
- W. M. Keck Center for advanced training in computational biology.
- B3E , Bioinformatics in France.
- UK MRC HGMPRC UK Human Genome Mapping Project Resource Centre.
- NCBI National Center for Biotechnology Information (USA).
- NLM National Library of Medicine (USA).
- CGATBSS , Canadian Genome Analysis & Technology (CGAT) Bioinformatics Support Services.
- DDBJ DNA data bank, Japan.
- GDB Genome Data Base.
- ANGIS Australian National Genomic Information Service.
- ANU Bioinformatics Hypermedia Service .
- HUM-MOLGEN Human Molecular Genetics.
- BioMOO The Virtual Meeting Place for Biologists
- BioBox , Finland.
- Information theory and molecular biology , Tom Schneider's group.
- ISREC (Swiss Institute for Experimental Cancer Research), Bioinformatics Group.
- DoubleTwist
- WWW in Biology , bionet.software.www.
- UCSC Computational Biology .
- Bioinformatics and Computational Biology at George Mason University .
- Computational Biology USC , University of Southern California.
- HUJI , Hebrew University of Jerusalem Hadassah Medical School: The Genomic and BioInformatics Server.
- Centre of Bioinformatics , Peking.
- Bioexchange.com
Papers
- Books on bioinformatics
- Primer on Molecular Genetics , including glossary .
- Recipe book for molecular sequence analysis (ANGIS).
- Protein Sequence Alignment and Database Scanning , Geoff Barton
- Introduction to sequence comparison , Keith Robison.
- Biocomputing Survival Guide
- EMBnet Biocomputing Tutorials
- Biocomputing Tutorials from EMBnet.
- Virtual School of Natural Sciences at the Globewide Network
Academy :
- Biocomputing for everyone , from the VSNS (includes Biocomputing in a nutshell ).
- BioComputing WWW course at the VSNS Virtual School of Natural Sciences
- Principles of protein structure WWW course .
Courses in Computational Biology
- Bioinformatics course in Indian Institute Of Information Technology- Allahabad, India
- Bioinformatics course in Bergen.
- International Master's program in Bioinformatics at Chalmers University of Technology , Gothenburg, Sweden.
- Computational Molecular Biology at Washington University.
- Keck Center, Pittsburgh, Pennsylvania .
- Medical informatics, Pittsburgh, Pennsylvania .
- The Penn Computational Biology Training Program .
- Medical Information Sciences 214 - Representations and Algorithms for Computational Molecular Biology, Stanford .
- Algorithms for Molecular Biology - Course Homepage , Israel.
- PSB Biocomputing Education workshop
- Computational Biology Course, Hopkins
- Bioinformatics courses at George Mason University.
- Biocomputing Course Resource List
- VSNS Multiple Alignment Resource Page
- How to become a bioinformatics expert , list of European courses.
- University Bioinformatics Programs - list provided by IHCP
Advanced Papers
- SAM , Sequence alignment and modeling system (using HMMs).
- Dirichlet mixtures , improving detection of weak homologies.
- Regularizers for estimating amino-acid distributions .
- Bill Pearson on homology search .
Journals
- Journal of Computational Biology .
- Bioinformatics , Bioinformatics Online
- CABIOS
- Protein Science.
- Proteins: Structure, Function and Genetics
- Genome Research
- Nature , Genome Gateway
- Nucleic Acids Research
- Journal of Molecular Biology .
- The Bioinformer , published by EBI.
- In Silico Biology , online journal
- PubMed , database of journals.
- Bioinform
- IDEAL , International Digital Electronic Access Library - online abstracts.
Related Sites
- International Society for Computational Biology
- The Molecular Biologist's Desk Reference .
- The Bioethics Internet Project ,
- ELSI , Ethical, legal and social implications of biotechnology.
- The DNA files , WWW pages of US radio program series on Human Genome research and its applications.
- CBPE , Center for Biotechnology Policy and Ethics.
- Eubios Ethics Institute
- Is a genome like a computer program , Gary Welz.
- DNA Computers , by Yali Friedman.
- PhD thesis on DNA computers
Links
- Microarray Informatics Resource Page , a collection of literature and web links.
- Biolinks from Bioplanet
- Biotechnology Software , maintained by The National Biotechnology Information Facility
- BRASS , Bioinformatics Resource for Algorithms, Software and Sequences.
- Showcase for new WWW servers.
- Bio-wURLd .
- List at SEQNET
- The World-Wide Web Virtual Library: Biosciences , Harvard.
- Survey of Molecular Biology Databases and Servers , R. Smith.
- Biologists's Control Panel includes searches of many databases.
- Pedro's BioMolecular Research Tool.
- Amos' WWW links .
- Pasteur Institute .
- Nee-How , The Bioresource Finder
- Web Resources for Protein Scientists , Protein Science.
- Motif Bioinformatics Server , Stanford.
- Search engine biological Web Sites .
- Jeff's
biolinks , Yale University.
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